JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLITRK4_chrX_143617790_143641101	0/0	t0089	6219	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0090	6210	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0091	6211	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0092	6210	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0093	6229	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0094	6227	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0095	6210	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0096	6234	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0097	6233	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0098	6233	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0099	6233	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0100	6215	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0101	6231	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/1	t0102	6222	1	0	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0103	6201	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0104	6217	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0105	6217	1	0	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0106	6212	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0107	6210	1	0	0	0	0	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0108	6210	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0109	6215	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0110	6207	1	0	0	0	0	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0111	6239	1	0	0	0	0	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0112	6218	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0113	6217	1	1	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0114	6227	1	0	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK5_chr13_87666371_87684616	0/1	t0001	2203	132	13	20	85	3	10	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	1/0	t0002	2199	111	33	34	14	13	16	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0003	2199	89	33	14	33	2	7	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0004	2203	24	0	1	23	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0005	2204	9	1	3	3	0	2	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0006	2200	5	0	0	4	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0007	2199	3	3	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0008	2200	3	2	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0009	2203	2	0	0	2	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0010	2203	2	0	0	2	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0011	2204	2	0	1	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0012	2199	2	0	0	0	0	2	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0013	2204	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0014	2200	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0015	2205	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0016	2199	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0017	2204	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0018	2203	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0019	2204	1	0	1	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0020	2200	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0021	2199	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0022	2203	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0023	2199	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0024	2199	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616