JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLITRK5_chr13_87666371_87684616	0/0	t0025	2199	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0026	2203	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0027	2199	1	1	0	0	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0028	2203	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0029	2203	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0030	2203	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0031	2203	1	0	0	1	0	0	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK5_chr13_87666371_87684616	0/0	t0032	2199	1	0	0	0	0	1	copy fasta	SLITRK5	chr13	87666371	87684616
SLITRK6_chr13_85787790_85804419	0/1	t0001	1723	153	7	21	112	3	9	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	1/0	t0002	1724	89	6	17	54	2	9	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0003	1724	60	30	15	0	6	9	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0004	1724	49	4	12	21	2	10	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0005	1724	27	22	1	4	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0006	1725	13	0	3	5	1	4	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0007	1724	9	8	1	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0008	1724	4	4	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0009	1723	4	0	0	4	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0010	1723	4	0	4	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0011	1724	3	3	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0012	1725	2	2	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0013	1724	2	0	0	0	0	2	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0014	1724	2	2	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0015	1724	2	2	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0016	1723	2	0	0	2	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0017	1725	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0018	1724	1	1	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0019	1724	1	1	0	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0020	1724	1	0	1	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0021	1723	1	0	0	0	0	1	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0022	1703	1	0	0	1	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLITRK6_chr13_85787790_85804419	0/0	t0023	1724	1	0	1	0	0	0	copy fasta	SLITRK6	chr13	85787790	85804419
SLK_chr10_103962140_104034233	0/1	t0001	4120	88	12	19	34	11	11	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0002	4124	64	7	14	32	2	9	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0003	4120	63	4	16	31	3	9	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0004	4120	46	2	3	41	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0005	4120	29	27	2	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0006	4120	22	3	1	10	0	8	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	1/0	t0007	4120	21	19	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0008	4119	7	0	0	7	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0009	4124	5	2	3	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0010	4120	4	0	0	4	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0011	4120	4	4	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0012	4120	3	3	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0013	4120	2	2	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0014	4120	2	2	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0015	4120	2	2	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0016	4120	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0017	4120	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0018	4120	1	0	0	0	0	1	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0019	4120	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233