JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLK_chr10_103962140_104034233	0/0	t0020	4120	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0021	4120	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0022	4120	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0023	4120	1	1	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0024	4120	1	1	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0025	4120	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0026	4120	1	1	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0027	4120	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0028	4120	1	1	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	t0029	4120	1	1	0	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLMAP_chr3_57751309_57935003	0/0	t0001	3853	95	21	19	43	4	8	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0002	3853	67	2	8	48	2	7	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	1/0	t0003	3853	35	23	8	0	1	2	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0004	3853	22	2	4	9	0	7	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/1	t0005	3853	21	0	15	1	1	3	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0006	3854	7	4	0	1	0	2	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0007	3853	5	0	0	5	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0008	3853	5	0	0	5	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0009	3853	4	3	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0010	3853	4	4	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0011	3853	4	3	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0012	3854	4	4	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0013	3853	4	0	0	4	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0014	3853	3	1	1	0	0	1	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0015	3853	3	2	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0016	3853	3	2	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0017	3853	2	0	0	2	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0018	3853	2	0	0	2	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0019	3853	1	0	0	0	0	1	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0020	3853	1	0	0	0	0	1	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0021	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0022	3853	1	0	0	0	0	1	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0023	3853	1	0	0	0	1	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0024	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0025	3853	1	1	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0026	3853	1	1	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0027	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0028	3853	1	0	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0029	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0030	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0031	3854	1	1	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0032	3854	1	1	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0033	3854	1	1	0	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0034	3853	1	0	0	0	0	1	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0035	3853	1	0	0	0	1	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0036	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0037	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	t0038	3853	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLN_chr11_107702378_107717056	0/0	t0001	627	302	67	47	159	6	23	copy fasta	SLN	chr11	107702378	107717056
SLN_chr11_107702378_107717056	1/1	t0002	627	100	20	23	30	8	17	copy fasta	SLN	chr11	107702378	107717056