JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLX1B_chr16_29449533_29463219	0/0	t0003	306	1	0	0	0	0	1	copy fasta	SLX1B	chr16	29449533	29463219
SLX4IP_chr20_10430305_10633030	1/1	t0001	4830	43	7	8	16	2	8	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0002	4831	36	3	12	18	1	2	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0003	4830	30	3	2	17	3	5	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0004	4830	23	1	6	15	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0005	4833	8	0	7	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0006	4832	8	7	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0007	4834	8	0	3	4	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0008	4830	7	5	1	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0009	4826	6	3	1	0	0	2	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0010	4826	5	4	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0011	4831	5	0	3	2	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0012	4832	4	1	3	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0013	4830	4	4	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0014	4829	4	0	4	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0015	4831	4	0	1	3	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0016	4832	3	0	2	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0017	4832	3	3	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0018	4833	3	2	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0019	4831	3	0	0	3	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0020	4829	3	0	2	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0021	4813	3	3	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0022	4830	3	2	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0023	4830	2	0	0	2	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0024	4831	2	2	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0025	4831	2	0	2	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0026	4829	2	1	0	0	1	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0027	4830	2	1	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0028	4817	2	2	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0029	4831	2	0	0	2	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0030	4830	2	2	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0031	4831	2	0	0	2	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0032	4834	1	0	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0033	4831	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0034	4833	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0035	4830	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0036	4832	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0037	4833	1	0	0	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0038	4831	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0039	4830	1	0	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0040	4831	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0041	4832	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0042	4832	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0043	4832	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0044	4831	1	0	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0045	4830	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0046	4831	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0047	4831	1	0	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0048	4833	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0049	4830	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030