JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLX4IP_chr20_10430305_10633030	0/0	t0050	4830	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0051	4829	1	0	0	0	1	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0052	4829	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0053	4813	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0054	4830	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0055	4831	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0056	4830	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0057	4831	1	0	0	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0058	4831	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0059	4830	1	0	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0060	4829	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0061	4829	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0062	4832	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	t0063	4830	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4_chr16_3576181_3616606	1/1	t0001	1811	332	63	59	156	10	42	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0002	1811	23	0	5	13	2	3	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0003	1811	8	8	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0004	1811	6	5	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0005	1811	5	5	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0006	1811	4	4	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0007	1811	3	3	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0008	1811	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0009	1811	2	2	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0010	1811	1	0	1	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0011	1811	1	0	1	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0012	1811	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0013	1811	1	0	0	1	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0014	1811	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0015	1811	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0016	1811	1	0	0	0	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0017	1811	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0018	1811	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0019	1811	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	t0020	1811	1	1	0	0	0	0	copy fasta	SLX4	chr16	3576181	3616606
SLX9_chr21_44935029_44981973	1/1	t0001	200	334	56	66	150	18	42	copy fasta	SLX9	chr21	44935029	44981973
SMAD1_chr4_145476853_145564176	0/0	t0001	1605	68	25	12	17	5	9	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	1/0	t0002	1605	65	0	14	44	3	3	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/1	t0003	1608	39	1	13	16	3	5	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0004	1606	34	12	2	13	0	7	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0005	1607	17	7	1	9	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0006	1607	10	0	2	5	1	2	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0007	1607	7	6	1	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0008	1607	6	4	2	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0009	1606	6	1	0	5	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0010	1606	5	3	2	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0011	1607	5	5	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0012	1607	5	5	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0013	1607	4	0	0	0	0	4	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0014	1604	4	4	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0015	1608	3	3	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176