Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BDH2_chr4_103072592_103104834	0/0	t0018	2183	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0019	2204	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0020	2183	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0021	2183	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0022	2183	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0023	2183	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0024	2183	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDKRB1_chr14_96251210_96269763	1/1	t0001	240	402	94	74	174	18	40	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	t0002	240	41	0	4	29	0	8	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	t0003	240	1	0	0	1	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB2_chr14_96199839_96249164	0/0	t0001	2813	120	7	26	81	1	5	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0002	2812	49	0	3	34	3	9	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0003	2813	34	0	1	29	0	4	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0004	2813	30	3	12	7	1	7	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0005	2813	25	2	2	20	1	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0006	2822	22	12	4	1	4	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0007	2822	11	4	5	0	1	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	1/0	t0008	2821	11	0	3	2	3	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0009	2813	10	0	0	7	0	3	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0010	2812	10	5	3	0	0	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0011	2822	9	7	1	1	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0012	2822	7	6	1	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0013	2822	7	2	3	0	2	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0014	2813	6	0	1	3	0	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0015	2670	5	3	0	0	1	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0016	2822	5	5	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0017	2821	5	4	0	0	0	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0018	2828	4	4	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0019	2661	3	0	1	0	0	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0020	2822	3	0	1	0	0	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0021	2822	3	0	3	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0022	2822	3	0	3	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0023	2823	3	2	1	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0024	2821	3	1	0	0	1	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0025	2812	2	0	2	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0026	3024	2	0	0	0	0	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0027	2814	2	2	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0028	2812	2	2	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0029	2737	2	0	2	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0030	2813	2	0	0	2	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0031	2822	2	0	0	0	0	2	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0032	2823	2	2	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0033	2746	2	2	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0034	2822	2	2	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0035	2746	2	2	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/1	t0036	2821	2	0	1	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0037	2813	1	0	0	1	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0038	2813	1	0	0	1	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0039	2662	1	0	0	0	0	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0040	2631	1	0	1	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164