JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD1_chr4_145476853_145564176	0/0	t0016	1607	3	1	1	1	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0017	1608	3	3	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0018	1606	2	1	1	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0019	1608	2	0	0	1	0	1	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0020	1606	2	2	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0021	1607	2	2	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0022	1607	2	2	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0023	1608	2	0	2	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0024	1608	1	0	0	1	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0025	1605	1	0	1	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0026	1606	1	0	0	0	0	1	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0027	1608	1	0	0	0	0	1	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0028	1606	1	1	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0029	1606	1	0	1	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0030	1608	1	1	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0031	1608	1	0	0	0	0	1	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0032	1607	1	0	0	0	0	1	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0033	1605	1	1	0	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0034	1605	1	0	1	0	0	0	copy fasta	SMAD1	chr4	145476853	145564176
SMAD1_chr4_145476853_145564176	0/0	t0035	1608	1	0	0	0	0	1	copy fasta	SMAD1	chr4	145476853	145564176
SMAD2_chr18_47803957_47935659	0/0	t0001	33229	10	1	0	8	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0002	33223	7	0	2	4	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0003	33216	4	0	1	3	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0004	33217	4	0	1	3	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0005	33227	3	0	0	3	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0006	33232	3	2	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0007	33223	3	0	3	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0008	33224	3	0	0	3	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0009	33221	3	0	3	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0010	33217	3	0	0	3	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0011	33222	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0012	33230	2	0	2	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0013	33229	2	0	1	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0014	33229	2	0	1	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0015	33231	2	0	1	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0016	33233	2	0	1	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0017	33233	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0018	33237	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0019	33236	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0020	33233	2	2	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0021	33223	2	1	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0022	33223	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0023	33223	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0024	33235	2	0	1	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0025	33245	2	2	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0026	33211	2	2	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0027	33217	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0028	33218	2	0	1	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0029	33217	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0030	33217	2	0	0	2	0	0	copy fasta	SMAD2	chr18	47803957	47935659