JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD2_chr18_47803957_47935659	0/0	t0031	33194	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0032	33228	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0033	32772	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0034	33229	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0035	33237	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0036	33242	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0037	33240	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0038	33242	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0039	33241	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0040	33242	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0041	33243	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0042	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0043	33231	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0044	33230	1	0	0	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0045	33231	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0046	33239	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0047	33223	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0048	33232	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0049	33235	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0050	33232	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0051	33229	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0052	33229	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0053	33230	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0054	33231	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0055	33232	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0056	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0057	33232	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0058	33232	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0059	33231	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0060	33221	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0061	33228	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0062	33229	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0063	33220	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0064	33226	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0065	33241	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0066	33229	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0067	33229	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0068	33219	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0069	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0070	33229	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0071	33219	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0072	33231	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0073	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0074	33228	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0075	33229	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0076	33229	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0077	33228	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0078	33229	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0079	33232	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0080	33232	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659