JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD2_chr18_47803957_47935659	0/0	t0081	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0082	33231	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0083	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0084	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0085	33232	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0086	33230	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0087	33233	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0088	33232	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0089	33233	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0090	33232	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0091	33233	1	0	0	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0092	33232	1	0	0	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0093	33233	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0094	33233	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0095	33232	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0096	33234	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0097	33237	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0098	33236	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0099	33236	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0100	33234	1	0	0	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0101	33239	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0102	33238	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0103	33235	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0104	33233	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0105	33233	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0106	33233	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0107	33236	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0108	33235	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0109	33233	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0110	33232	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0111	33235	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0112	33233	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0113	33235	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0114	33221	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0115	33235	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0116	33231	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0117	33232	1	0	0	0	1	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0118	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0119	33234	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0120	33229	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0121	33230	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0122	33230	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0123	33230	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0124	33231	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0125	33230	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0126	33231	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0127	33232	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0128	33236	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0129	33233	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0130	33230	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659