JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD2_chr18_47803957_47935659	0/0	t0231	33222	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0232	33220	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0233	33218	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0234	33218	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0235	33217	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0236	33217	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0237	33218	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0238	33218	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0239	33218	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0240	33222	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0241	33218	1	0	0	1	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0242	33219	1	0	1	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0243	33219	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0244	33228	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0245	33219	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0246	33220	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0247	33268	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0248	33266	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0249	33268	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0250	33274	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0251	33279	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0252	33253	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0253	33256	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0254	33260	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0255	33229	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0256	33235	1	0	0	0	0	1	copy fasta	SMAD2	chr18	47803957	47935659
SMAD2_chr18_47803957_47935659	0/0	t0257	33230	1	1	0	0	0	0	copy fasta	SMAD2	chr18	47803957	47935659
SMAD3_chr15_67060602_67200169	0/0	t0001	5184	61	5	18	28	3	7	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0002	5184	40	10	10	13	0	7	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0003	5184	36	16	3	13	1	3	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0004	5184	22	2	14	0	1	5	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0005	5184	15	2	3	7	0	3	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0006	5184	11	3	1	6	0	1	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	1/0	t0007	5187	10	4	0	5	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0008	5187	7	4	0	3	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0009	5184	7	1	0	0	0	6	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0010	5184	7	7	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0011	5184	6	0	0	2	2	2	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/1	t0012	5184	5	0	3	0	1	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0013	5184	5	0	0	5	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0014	5184	5	0	0	5	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0015	5184	4	0	0	2	0	2	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0016	5184	4	3	1	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0017	5184	3	1	2	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0018	5184	3	3	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0019	5184	3	0	1	0	2	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0020	5184	3	2	1	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0021	5184	3	0	0	2	0	1	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0022	5184	3	0	0	3	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0023	5184	3	3	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169