JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD3_chr15_67060602_67200169	0/0	t0024	5184	2	0	0	2	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0025	5187	2	2	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0026	5184	2	0	0	0	0	2	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0027	5184	2	0	0	2	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0028	5184	2	2	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0029	5184	2	2	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0030	5184	2	0	2	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0031	5184	2	0	0	2	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0032	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0033	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0034	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0035	5187	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0036	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0037	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0038	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0039	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0040	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0041	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0042	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0043	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0044	5187	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0045	5184	1	0	0	0	0	1	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0046	5184	1	0	0	0	0	1	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0047	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0048	5184	1	0	1	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0049	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0050	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0051	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0052	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0053	5184	1	0	0	0	0	1	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0054	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0055	5184	1	0	0	1	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0056	5187	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0057	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0058	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD3_chr15_67060602_67200169	0/0	t0059	5184	1	1	0	0	0	0	copy fasta	SMAD3	chr15	67060602	67200169
SMAD4_chr18_51025213_51090042	0/0	t0001	7095	44	1	13	26	2	2	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/1	t0002	7118	35	4	5	21	1	3	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	1/0	t0003	7114	23	12	4	4	1	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0004	7116	19	9	2	3	1	4	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0005	7095	19	6	6	2	1	4	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0006	7120	13	1	8	3	0	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0007	7112	11	4	0	7	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0008	7122	8	1	4	2	0	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0009	7118	8	0	1	5	0	2	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0010	7118	8	1	3	2	1	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0011	7099	8	0	1	7	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0012	7101	5	5	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0013	7096	5	0	0	5	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0014	7096	4	0	0	4	0	0	copy fasta	SMAD4	chr18	51025213	51090042