JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD4_chr18_51025213_51090042	0/0	t0015	7098	3	3	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0016	7110	3	3	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0017	7116	3	0	0	0	0	3	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0018	7118	3	0	0	3	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0019	7118	3	0	1	2	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0020	7097	3	1	1	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0021	7095	3	0	0	3	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0022	7116	3	0	3	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0023	7102	3	3	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0024	7096	2	0	0	2	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0025	7094	2	0	0	2	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0026	7095	2	2	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0027	7124	2	0	2	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0028	7114	2	1	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0029	7112	2	0	0	2	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0030	7114	2	2	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0031	7092	2	2	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0032	7097	2	0	2	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0033	7118	2	1	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0034	7120	2	0	2	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0035	7099	2	2	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0036	7095	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0037	7114	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0038	7118	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0039	7094	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0040	7118	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0041	7097	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0042	7108	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0043	7116	1	0	0	0	0	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0044	7118	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0045	7126	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0046	7120	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0047	7116	1	0	0	0	0	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0048	7114	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0049	7120	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0050	7110	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0051	7114	1	0	0	0	0	1	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0052	7095	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0053	7097	1	0	0	0	1	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0054	7091	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0055	7095	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0056	7119	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0057	7115	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0058	7096	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0059	7115	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0060	7110	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0061	7116	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0062	7112	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0063	7110	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0064	7114	1	0	0	0	0	1	copy fasta	SMAD4	chr18	51025213	51090042