JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD4_chr18_51025213_51090042	0/0	t0065	7114	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0066	7096	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0067	7101	1	0	1	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0068	7103	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0069	7107	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0070	7103	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0071	7101	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0072	7099	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0073	7112	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0074	7095	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0075	7114	1	1	0	0	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD4_chr18_51025213_51090042	0/0	t0076	7110	1	0	0	1	0	0	copy fasta	SMAD4	chr18	51025213	51090042
SMAD5_chr5_136127845_136187733	1/1	t0001	5616	117	19	18	61	5	12	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0002	5620	60	10	5	36	4	5	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0003	5619	43	14	12	12	2	3	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0004	5619	8	6	2	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0005	5620	7	5	2	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0006	5620	7	0	0	7	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0007	5619	6	6	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0008	5616	4	0	0	4	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0009	5616	4	0	3	0	1	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0010	5616	3	2	1	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0011	5621	3	0	0	3	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0012	5615	3	0	0	3	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0013	5619	3	3	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0014	5617	3	2	1	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0015	5619	3	2	1	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0016	5617	2	2	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0017	5619	2	2	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0018	5619	2	0	0	0	2	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0019	5616	1	0	0	1	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0020	5620	1	0	0	1	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0021	5616	1	0	0	1	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0022	5616	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0023	5616	1	0	1	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0024	5616	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0025	5620	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0026	5620	1	0	0	1	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0027	5620	1	0	0	1	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0028	5620	1	0	0	1	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0029	5617	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0030	5619	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0031	5620	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD5_chr5_136127845_136187733	0/0	t0032	5617	1	1	0	0	0	0	copy fasta	SMAD5	chr5	136127845	136187733
SMAD6_chr15_66697236_66787849	0/0	t0001	2341	96	36	9	38	3	10	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0002	2341	50	4	12	24	2	8	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0003	2341	38	6	12	8	7	5	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0004	2341	35	8	9	14	1	3	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/1	t0005	2341	26	6	8	5	1	5	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0006	2341	16	5	1	8	1	1	copy fasta	SMAD6	chr15	66697236	66787849