JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD6_chr15_66697236_66787849	0/0	t0007	2339	15	1	1	13	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0008	2345	13	0	0	12	0	1	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0009	2339	6	0	0	5	0	1	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0010	2341	5	3	2	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0011	2345	4	0	0	4	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	1/0	t0012	2338	4	2	0	0	1	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0013	2345	4	0	0	4	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0014	2338	3	1	2	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0015	2341	2	0	2	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0016	2341	2	2	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0017	2335	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0018	2343	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0019	2341	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0020	2341	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0021	2341	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0022	2341	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0023	2339	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0024	2345	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0025	2341	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0026	2343	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0027	2338	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0028	2341	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0029	2341	1	0	0	0	0	1	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0030	2339	1	0	0	0	0	1	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0031	2336	1	1	0	0	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0032	2343	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD6_chr15_66697236_66787849	0/0	t0033	2339	1	0	0	1	0	0	copy fasta	SMAD6	chr15	66697236	66787849
SMAD7_chr18_48914853_48955965	1/0	t0001	2061	260	45	53	114	14	33	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0002	2061	36	1	2	29	1	3	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0003	2061	26	24	2	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/1	t0004	2061	23	0	7	9	3	3	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0005	2061	7	7	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0006	2061	6	1	5	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0007	2061	5	0	0	1	0	4	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0008	2061	4	4	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0009	2062	4	1	1	1	0	1	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0010	2061	3	3	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0011	2061	3	3	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0012	2061	2	0	0	2	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0013	2062	2	0	0	1	0	1	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0014	2061	2	1	1	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0015	2061	2	2	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0016	2061	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0017	2061	1	0	1	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0018	2061	1	0	1	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0019	2061	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0020	2061	1	0	1	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0021	2061	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0022	2061	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0023	2061	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965