Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BDKRB2_chr14_96199839_96249164	0/0	t0041	2813	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0042	2813	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0043	2813	1	0	0	1	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0044	2737	1	0	0	1	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0045	2813	1	0	1	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0046	2813	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0047	2813	1	0	0	1	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0048	2822	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0049	2776	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0050	2822	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0051	2837	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0052	2776	1	0	1	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0053	2807	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0054	2822	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0055	2821	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0056	2822	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0057	2822	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0058	2670	1	0	0	0	0	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0059	2837	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	t0060	2822	1	0	0	0	0	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDNF_chr11_27649893_27705455	0/1	t0001	3241	81	7	20	37	5	11	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0002	3241	71	2	12	40	3	14	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0003	3242	47	16	21	2	5	3	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0004	3242	43	15	10	16	2	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0005	3242	31	4	2	16	0	9	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0006	3242	16	9	3	4	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0007	3241	15	0	0	15	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0008	3242	12	11	1	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0009	3241	7	0	0	7	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0010	3241	7	7	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0011	3241	5	5	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0012	3242	3	3	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0013	3241	3	0	0	0	0	3	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	1/0	t0014	3242	2	1	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0015	3242	2	0	0	2	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0016	3242	2	0	2	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0017	3241	2	2	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0018	3241	2	2	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0019	3242	1	0	0	1	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0020	3242	1	0	0	0	1	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0021	3241	1	0	0	1	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0022	3241	1	1	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0023	3241	1	0	0	1	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0024	3241	1	1	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0025	3241	1	0	0	1	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0026	3241	1	0	0	1	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	t0027	3242	1	0	1	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDP1_chr5_71450651_71572820	0/0	t0001	3163	146	34	27	61	5	19	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0002	3163	114	21	21	55	3	14	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0003	3163	19	5	2	11	0	1	copy fasta	BDP1	chr5	71450651	71572820