JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD7_chr18_48914853_48955965	0/0	t0024	2061	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0025	2062	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0026	2062	1	0	0	0	0	1	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0027	2061	1	0	0	1	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD7_chr18_48914853_48955965	0/0	t0028	2061	1	1	0	0	0	0	copy fasta	SMAD7	chr18	48914853	48955965
SMAD9_chr13_36839831_36925238	0/1	t0001	4147	39	3	8	20	1	6	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0002	4150	28	0	5	19	0	4	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0003	4136	20	0	1	18	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0004	4142	20	0	0	16	0	4	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0005	4153	18	2	5	9	0	2	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0006	4145	16	1	9	3	0	3	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0007	4133	15	0	0	14	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0008	4130	10	0	4	4	1	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0009	4151	8	0	5	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0010	4136	8	0	0	2	0	6	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0011	4139	7	7	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0012	4139	6	0	0	5	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0013	4148	6	1	2	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0014	4139	5	3	2	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0015	4147	5	0	2	2	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0016	4147	5	1	2	0	0	2	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0017	4133	5	0	1	4	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0018	4150	4	0	1	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0019	4148	4	0	0	3	1	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0020	4154	4	1	0	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	1/0	t0021	4155	4	1	0	2	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0022	4135	4	3	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0023	4153	3	0	2	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0024	4152	3	0	2	0	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0025	4128	3	0	1	0	1	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0026	4142	3	2	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0027	4137	3	2	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0028	4131	3	2	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0029	4133	3	3	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0030	4147	3	2	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0031	4153	3	3	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0032	4147	3	0	0	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0033	4129	3	3	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0034	4124	3	0	2	0	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0035	4138	3	0	0	0	0	3	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0036	4147	3	0	0	3	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0037	4156	2	1	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0038	4127	2	0	1	0	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0039	4159	2	2	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0040	4152	2	0	1	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0041	4153	2	2	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0042	4140	2	2	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0043	4142	2	2	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0044	4147	2	2	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0045	4151	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238