JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD9_chr13_36839831_36925238	0/0	t0046	4152	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0047	4136	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0048	4145	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0049	4139	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0050	4154	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0051	4139	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0052	4149	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0053	4133	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0054	4149	1	0	0	0	1	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0055	4135	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0056	4137	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0057	4133	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0058	4143	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0059	4142	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0060	4143	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0061	4159	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0062	4153	1	0	0	0	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0063	4153	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0064	4153	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0065	4138	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0066	4152	1	0	0	0	1	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0067	4153	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0068	4153	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0069	4153	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0070	4140	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0071	4137	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0072	4140	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0073	4136	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0074	4140	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0075	4141	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0076	4146	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0077	4131	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0078	4147	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0079	4148	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0080	4134	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0081	4144	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0082	4127	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0083	4142	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0084	4136	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0085	4139	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0086	4130	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0087	4149	1	0	0	0	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0088	4148	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0089	4130	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0090	4132	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0091	4144	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0092	4146	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0093	4145	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0094	4147	1	0	0	0	0	1	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0095	4147	1	0	1	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238