JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAD9_chr13_36839831_36925238	0/0	t0096	4131	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0097	4129	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0098	4147	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0099	4134	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0100	4127	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0101	4127	1	0	0	1	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0102	4139	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAD9_chr13_36839831_36925238	0/0	t0103	4165	1	1	0	0	0	0	copy fasta	SMAD9	chr13	36839831	36925238
SMAGP_chr12_51239558_51275415	0/1	t0001	1583	122	20	36	39	9	17	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0002	1583	91	13	14	62	0	2	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0003	1584	57	7	9	33	3	5	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0004	1582	37	1	9	16	2	9	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0005	1585	14	0	0	14	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0006	1582	10	7	0	3	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0007	1582	10	10	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0008	1583	7	6	1	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	1/0	t0009	1582	7	6	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0010	1584	6	0	0	3	0	3	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0011	1584	5	2	1	2	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0012	1582	5	0	2	2	0	1	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0013	1582	5	5	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0014	1586	4	0	0	4	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0015	1583	4	4	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0016	1585	4	1	2	1	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0017	1583	2	2	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0018	1583	2	2	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0019	1584	2	2	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0020	1582	2	2	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0021	1582	1	0	0	0	0	1	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0022	1582	1	0	0	0	0	1	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0023	1583	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0024	1582	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0025	1583	1	0	0	1	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0026	1583	1	0	0	0	0	1	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0027	1583	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0028	1585	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0029	1584	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0030	1584	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0031	1583	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0032	1582	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0033	1583	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAGP_chr12_51239558_51275415	0/0	t0034	1583	1	1	0	0	0	0	copy fasta	SMAGP	chr12	51239558	51275415
SMAP1_chr6_70662883_70867003	1/1	t0001	1811	151	36	36	49	9	19	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0002	1811	58	19	2	36	1	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0003	1811	51	6	11	22	2	10	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0004	1811	13	0	1	12	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0005	1812	5	5	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0006	1811	3	0	0	0	0	3	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0007	1811	2	0	1	0	0	1	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0008	1793	2	0	0	2	0	0	copy fasta	SMAP1	chr6	70662883	70867003