JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMAP1_chr6_70662883_70867003	0/0	t0009	1811	2	0	1	0	0	1	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0010	1811	2	2	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0011	1812	2	2	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0012	1811	1	0	0	0	0	1	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0013	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0014	1811	1	0	0	0	0	1	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0015	1811	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0016	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0017	1811	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0018	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0019	1811	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0020	1811	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0021	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0022	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0023	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0024	1811	1	0	0	1	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0025	1811	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP1_chr6_70662883_70867003	0/0	t0026	1811	1	1	0	0	0	0	copy fasta	SMAP1	chr6	70662883	70867003
SMAP2_chr1_40368727_40428322	1/1	t0001	1616	377	81	59	180	15	40	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0002	1616	7	0	1	6	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0003	1615	4	4	0	0	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0004	1618	4	4	0	0	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0005	1616	3	0	0	3	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0006	1616	3	3	0	0	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0007	1616	1	0	0	1	0	0	copy fasta	SMAP2	chr1	40368727	40428322
SMAP2_chr1_40368727_40428322	0/0	t0008	1616	1	0	0	0	1	0	copy fasta	SMAP2	chr1	40368727	40428322
SMARCA1_chrX_129441506_129528490	1/1	t0001	777	215	67	41	78	5	22	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	t0002	777	63	1	5	57	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA1_chrX_129441506_129528490	0/0	t0003	776	1	0	0	1	0	0	copy fasta	SMARCA1	chrX	129441506	129528490
SMARCA2_chr9_2010347_2198620	1/1	t0001	976	218	40	43	100	11	22	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0002	976	72	29	16	26	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0003	976	5	5	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0004	976	3	0	1	0	2	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0005	976	3	3	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0006	976	2	1	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0007	976	2	1	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0008	976	1	0	0	0	1	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0009	976	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0010	976	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0011	976	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0012	976	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0013	976	1	0	0	0	0	1	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0014	976	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0015	988	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0016	976	1	0	0	1	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0017	976	1	0	1	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA2_chr9_2010347_2198620	0/0	t0018	976	1	1	0	0	0	0	copy fasta	SMARCA2	chr9	2010347	2198620
SMARCA4_chr19_10956030_11067273	1/1	t0001	634	283	69	47	117	10	38	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	t0002	634	1	0	1	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA4_chr19_10956030_11067273	0/0	t0003	634	1	1	0	0	0	0	copy fasta	SMARCA4	chr19	10956030	11067273