JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMARCA4_chr19_10956030_11067273	0/0	t0004	634	1	0	0	1	0	0	copy fasta	SMARCA4	chr19	10956030	11067273
SMARCA5_chr4_143508702_143562486	0/0	t0001	4523	99	10	12	71	1	5	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0002	4527	71	9	11	43	1	7	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0003	4527	62	3	14	30	3	12	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/1	t0004	4527	32	4	10	9	3	5	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0005	4527	20	4	8	1	3	4	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0006	4526	10	8	1	0	0	1	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0007	4526	10	8	2	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0008	4527	10	9	1	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	1/0	t0009	4526	4	3	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0010	4523	4	0	0	4	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0011	4523	4	0	2	0	2	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0012	4527	4	4	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0013	4526	3	3	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0014	4526	3	3	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0015	4527	2	0	2	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0016	4523	2	0	0	2	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0017	4528	2	2	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0018	4527	2	0	0	2	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0019	4527	2	2	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0020	4523	1	0	1	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0021	4523	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0022	4527	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0023	4523	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0024	4526	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0025	4527	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0026	4527	1	0	0	0	1	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0027	4527	1	0	1	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0028	4528	1	0	0	0	0	1	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0029	4527	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0030	4526	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0031	4526	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0032	4523	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0033	4523	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0034	4524	1	0	1	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0035	4528	1	0	0	0	0	1	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0036	4526	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0037	4526	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0038	4526	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0039	4527	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0040	4527	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0041	4528	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0042	4528	1	0	0	1	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCA5_chr4_143508702_143562486	0/0	t0043	4526	1	1	0	0	0	0	copy fasta	SMARCA5	chr4	143508702	143562486
SMARCAD1_chr4_94202865_94296292	0/1	t0001	2014	134	17	18	81	4	13	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	1/0	t0002	2014	118	37	18	40	6	16	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0003	2014	45	28	10	0	4	3	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0004	2011	5	0	5	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0005	2013	3	0	0	3	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0006	2010	3	0	1	0	0	2	copy fasta	SMARCAD1	chr4	94202865	94296292