JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMARCAD1_chr4_94202865_94296292	0/0	t0007	2014	3	3	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0008	2014	2	2	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0009	2014	1	1	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0010	2014	1	0	0	1	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0011	2014	1	1	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0012	2014	1	0	0	1	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0013	2014	1	1	0	0	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0014	2014	1	0	0	1	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0015	2014	1	0	0	1	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0016	2014	1	0	0	1	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAD1_chr4_94202865_94296292	0/0	t0017	2014	1	0	0	1	0	0	copy fasta	SMARCAD1	chr4	94202865	94296292
SMARCAL1_chr2_216407484_216488053	1/1	t0001	337	306	84	54	132	10	24	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	t0002	337	89	0	9	62	6	12	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	t0003	337	8	7	1	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	t0004	337	3	3	0	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCAL1_chr2_216407484_216488053	0/0	t0005	337	2	2	0	0	0	0	copy fasta	SMARCAL1	chr2	216407484	216488053
SMARCB1_chr22_23781966_23843009	0/1	t0001	4032	67	1	25	28	4	8	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0002	4034	52	6	4	35	1	6	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0003	4030	33	6	6	7	4	10	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0004	4033	28	3	4	15	3	3	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0005	4010	23	3	10	5	4	1	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0006	4033	20	1	1	18	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0007	4032	16	0	2	14	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0008	4032	15	0	2	9	0	4	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0009	4056	13	12	1	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0010	4007	9	0	0	6	0	3	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0011	4010	8	7	1	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0012	4033	8	8	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0013	4056	7	5	2	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0014	4010	5	4	1	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0015	4034	5	0	0	5	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0016	4056	4	4	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0017	4033	3	3	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0018	4056	3	3	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0019	4030	2	2	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0020	4010	2	0	2	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0021	4033	2	2	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0022	4033	2	2	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0023	4056	2	2	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0024	4056	2	2	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0025	4056	2	2	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0026	4033	1	0	1	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0027	4030	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0028	4056	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0029	4007	1	0	0	0	0	1	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0030	4007	1	0	0	0	0	1	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0031	4035	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0032	4030	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0033	4030	1	0	0	0	0	1	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0034	4030	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009