JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMARCB1_chr22_23781966_23843009	0/0	t0035	4010	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0036	4010	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0037	4010	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0038	4034	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0039	4034	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0040	4034	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0041	4033	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0042	4033	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0043	4029	1	0	1	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0044	4033	1	0	0	0	0	1	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0045	4033	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0046	4032	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0047	4032	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0048	4056	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0049	4056	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0050	4033	1	1	0	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0051	4033	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0052	4032	1	0	1	0	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0053	4032	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0054	4032	1	0	0	1	0	0	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCB1_chr22_23781966_23843009	0/0	t0055	4034	1	0	0	0	0	1	copy fasta	SMARCB1	chr22	23781966	23843009
SMARCC1_chr3_47580269_47786893	0/0	t0001	3038	107	36	20	36	1	14	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0002	3038	94	22	19	38	2	13	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0003	3038	5	0	0	4	0	1	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	1/0	t0004	3037	3	2	0	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0005	3038	1	0	1	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0006	3038	1	0	0	0	0	1	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0007	3038	1	1	0	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0008	3038	1	0	0	0	1	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0009	3038	1	0	1	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0010	3038	1	0	1	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0011	3038	1	1	0	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0012	3038	1	0	0	1	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0013	3038	1	0	0	1	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	t0014	3038	1	0	0	0	0	1	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC2_chr12_56157359_56194483	1/1	t0001	1353	148	34	33	65	7	7	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0002	1354	49	41	6	1	0	1	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0003	1352	39	1	8	12	2	16	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0004	1354	8	0	0	8	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0005	1354	2	0	0	0	2	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0006	1354	1	0	1	0	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0007	1353	1	0	0	1	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0008	1353	1	0	0	1	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	t0009	1353	1	0	0	0	1	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCD1_chr12_50080342_50105707	1/1	t0001	1736	353	90	70	148	12	31	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0002	1736	2	2	0	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0003	1736	2	2	0	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0004	1736	1	0	0	0	0	1	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0005	1736	1	0	0	1	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0006	1736	1	1	0	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707