JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMARCD1_chr12_50080342_50105707	0/0	t0007	1736	1	0	0	0	1	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0008	1736	1	0	0	1	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0009	1736	1	1	0	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0010	1736	1	1	0	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0011	1736	1	0	0	0	1	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	t0012	1736	1	1	0	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD2_chr17_63827081_63847685	0/1	t0001	869	236	75	42	85	10	23	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	t0002	869	101	4	17	61	6	13	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	1/0	t0003	869	7	0	5	0	0	1	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	t0004	869	6	6	0	0	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	t0005	869	2	2	0	0	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	t0006	869	1	1	0	0	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	t0007	869	1	0	0	0	0	1	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD3_chr7_151233780_151253694	0/0	t0001	456	165	32	28	88	2	15	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCD3_chr7_151233780_151253694	0/0	t0002	456	157	48	32	37	12	28	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCD3_chr7_151233780_151253694	0/0	t0003	456	53	7	10	33	2	1	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCD3_chr7_151233780_151253694	0/0	t0004	456	7	7	0	0	0	0	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCE1_chr17_40619962_40652818	1/1	t0001	3915	93	11	17	47	7	9	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0002	3948	73	10	20	27	9	7	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0003	3950	68	4	11	48	0	5	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0004	3948	67	18	0	45	1	3	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0005	3949	25	24	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0006	3949	8	8	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0007	3951	8	0	1	5	0	2	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0008	3949	7	0	0	6	0	1	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0009	3915	5	0	0	5	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0010	3947	4	0	3	0	0	1	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0011	3950	3	0	0	2	0	1	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0012	3951	3	3	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0013	3950	3	0	0	3	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0014	3917	2	1	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0015	3917	2	0	2	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0016	3915	2	0	1	0	1	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0017	3915	2	0	2	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0018	3947	2	0	0	1	0	1	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0019	3948	2	2	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0020	3949	2	0	0	2	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0021	3950	2	0	0	2	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0022	3949	2	0	0	2	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0023	3917	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0024	3950	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0025	3950	1	0	0	0	0	1	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0026	3948	1	0	0	1	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0027	3948	1	0	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0028	3948	1	0	0	0	0	1	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0029	3948	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0030	3948	1	0	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0031	3950	1	0	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0032	3948	1	0	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	t0033	3949	1	0	0	1	0	0	copy fasta	SMARCE1	chr17	40619962	40652818