JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMC2_chr9_104089309_104146419	0/0	t0016	2335	2	0	2	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0017	2337	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0018	2335	1	0	0	1	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0019	2335	1	0	1	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0020	2335	1	0	0	0	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0021	2335	1	0	0	0	1	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0022	2335	1	0	0	0	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0023	2335	1	0	0	0	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0024	2335	1	0	0	0	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0025	2335	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0026	2335	1	0	0	1	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0027	2337	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0028	2335	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0029	2335	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0030	2335	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0031	2335	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0032	2335	1	0	0	1	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0033	2335	1	0	0	0	1	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0034	2335	1	0	1	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0035	2335	1	0	1	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	t0036	2335	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC3_chr10_110562695_110611048	0/0	t0001	1869	140	20	22	75	2	21	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0002	1869	80	8	13	53	0	6	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	1/0	t0003	1869	58	40	7	9	0	1	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0004	1869	9	0	1	8	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0005	1869	7	0	5	1	0	1	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0006	1869	6	6	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0007	1869	6	0	5	0	0	1	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/1	t0008	1869	2	0	0	0	0	1	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0009	1869	2	2	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0010	1869	2	2	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0011	1869	2	0	0	0	0	2	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0012	1869	1	0	1	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0013	1869	1	1	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0014	1869	1	0	1	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0015	1869	1	0	1	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0016	1869	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0017	1869	1	1	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0018	1869	1	1	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0019	1869	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0020	1869	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0021	1869	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0022	1869	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0023	1869	1	0	0	0	0	1	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0024	1869	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	t0025	1869	1	1	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC4_chr3_160394650_160439953	1/1	t0001	1250	151	33	27	66	5	18	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0002	1250	73	9	19	34	2	9	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0003	1250	44	13	13	7	4	7	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0004	1250	17	16	1	0	0	0	copy fasta	SMC4	chr3	160394650	160439953