Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACOX1_chr17_75936507_75984166	0/0	t0054	5338	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0055	5337	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0056	5336	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0057	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0058	5336	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0059	5337	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0060	5336	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0061	5338	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0062	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0063	5335	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0064	5336	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0065	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0066	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0067	5335	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0068	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0069	5336	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0070	5334	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0071	5335	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0072	5332	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0073	5334	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0074	5335	1	0	0	0	1	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0075	5335	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0076	5335	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0077	5336	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX2_chr3_58500136_58542190	0/1	t0001	252	313	56	65	137	13	41	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	1/0	t0002	252	46	35	8	0	1	1	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	t0003	252	2	2	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	t0004	252	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	t0005	252	1	0	1	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	t0006	252	1	0	0	1	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX3_chr4_8361282_8445723	1/0	t0001	770	253	50	49	115	10	28	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0002	770	80	14	10	43	3	10	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0003	770	18	16	1	0	1	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0004	770	7	7	0	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0005	770	6	5	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/1	t0006	770	3	1	0	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0007	770	3	3	0	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0008	770	2	0	0	0	0	2	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0009	770	2	0	1	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0010	770	2	0	1	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0011	770	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0012	770	1	0	0	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0013	770	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	t0014	770	1	0	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOXL_chr2_110727573_111123548	1/1	t0001	957	95	40	20	19	5	9	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	t0002	956	46	21	5	14	3	3	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	t0003	957	3	0	0	3	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	t0004	956	3	0	1	2	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	t0005	957	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	t0006	956	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548