Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BDP1_chr5_71450651_71572820	0/0	t0004	3163	10	1	3	3	0	3	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0005	3163	7	0	0	7	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0006	3163	5	4	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0007	3156	4	4	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0008	3163	2	2	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0009	3163	2	2	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0010	3163	2	2	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0011	3163	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0012	3163	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0013	3163	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/1	t0014	3163	1	0	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0015	3163	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0016	3163	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0017	3163	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0018	3163	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0019	3163	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0020	3163	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0021	3163	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0022	3163	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0023	3163	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	t0024	3163	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BEAN1_chr16_66422295_66487833	1/1	t0001	2128	180	40	35	69	7	27	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0002	2128	47	11	5	24	1	6	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0003	2128	44	15	9	19	0	1	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0004	2128	15	13	2	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0005	2128	2	0	0	0	2	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0006	2128	2	1	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0007	2128	2	2	0	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0008	2128	2	2	0	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0009	2128	1	1	0	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0010	2128	1	0	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0011	2168	1	0	1	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	t0012	2128	1	1	0	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BECN1_chr17_42805134_42829282	1/1	t0001	757	201	77	50	40	8	24	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	t0002	757	52	1	6	37	4	4	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	t0003	757	13	2	0	7	0	4	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	t0004	757	4	0	0	4	0	0	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	t0005	757	2	0	0	2	0	0	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	t0006	757	2	2	0	0	0	0	copy fasta	BECN1	chr17	42805134	42829282
BEGAIN_chr14_100532147_100592417	0/1	t0001	950	277	77	57	112	9	21	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0002	950	12	12	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0003	950	9	0	0	9	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	1/0	t0004	950	5	0	0	2	0	2	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0005	951	5	1	1	2	0	1	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0006	950	5	3	0	0	0	2	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0007	950	2	0	0	2	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0008	950	2	0	0	0	0	2	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0009	950	1	0	0	0	1	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0010	950	1	1	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0011	950	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417