JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMC4_chr3_160394650_160439953	0/0	t0005	1250	10	2	0	3	1	4	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0006	1250	10	4	1	5	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0007	1250	8	7	1	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0008	1250	4	0	0	4	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0009	1250	4	0	0	4	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0010	1250	3	3	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0011	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0012	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0013	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0014	1250	1	0	0	1	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0015	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0016	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0017	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	t0018	1250	1	1	0	0	0	0	copy fasta	SMC4	chr3	160394650	160439953
SMC5_chr9_70253978_70359873	1/1	t0001	2644	169	32	21	84	4	26	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0002	2644	151	35	37	64	4	11	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0003	2643	8	7	1	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0004	2644	7	0	5	2	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0005	2644	5	2	2	0	1	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0006	2644	4	4	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0007	2644	3	1	2	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0008	2644	3	1	1	0	1	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0009	2644	2	2	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0010	2668	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0011	2644	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0012	2644	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0013	2644	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0014	2644	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0015	2644	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0016	2644	1	0	0	0	0	1	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0017	2644	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0018	2644	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0019	2644	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0020	2644	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0021	2644	1	1	0	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0022	2644	1	0	0	1	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC5_chr9_70253978_70359873	0/0	t0023	2644	1	0	1	0	0	0	copy fasta	SMC5	chr9	70253978	70359873
SMC6_chr2_17658812_17758810	0/1	t0001	1965	73	44	16	3	5	4	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0002	1965	69	22	18	10	6	13	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	1/0	t0003	1965	64	2	18	36	2	5	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0004	1964	22	5	1	16	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0005	1964	10	4	0	4	1	1	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0006	1965	2	1	1	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0007	1965	2	2	0	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0008	1965	2	0	1	0	0	1	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0009	1965	2	2	0	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0010	1965	1	0	1	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0011	1965	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0012	1964	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0013	1965	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810