JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMC6_chr2_17658812_17758810	0/0	t0014	1965	1	0	1	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0015	1965	1	0	1	0	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0016	1965	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMC6_chr2_17658812_17758810	0/0	t0017	1964	1	0	0	1	0	0	copy fasta	SMC6	chr2	17658812	17758810
SMCHD1_chr18_2650726_2810017	0/0	t0001	2811	81	9	11	49	4	8	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0002	2815	53	8	9	30	0	6	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0003	2813	40	6	19	2	4	9	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0004	2813	30	5	11	10	3	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0005	2815	19	0	2	15	1	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0006	2817	16	0	5	11	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0007	2813	9	9	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	1/0	t0008	2816	8	5	2	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0009	2811	8	8	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/1	t0010	2813	5	1	2	0	1	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0011	2813	5	4	1	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0012	2817	5	0	0	5	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0013	2815	5	3	2	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0014	2815	4	4	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0015	2813	4	0	1	3	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0016	2811	4	4	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0017	2813	3	3	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0018	2815	3	3	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0019	2815	3	3	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0020	2811	3	0	0	3	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0021	2805	2	2	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0022	2813	2	2	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0023	2815	2	2	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0024	2815	2	0	0	2	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0025	2816	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0026	2813	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0027	2813	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0028	2813	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0029	2805	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0030	2815	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0031	2811	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0032	2811	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0033	2811	1	0	1	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0034	2813	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0035	2813	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0036	2813	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0037	2813	1	0	0	0	0	1	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0038	2815	1	0	0	0	1	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0039	2815	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0040	2815	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0041	2811	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0042	2815	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0043	2811	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0044	2811	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0045	2813	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0046	2811	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017