JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMCHD1_chr18_2650726_2810017	0/0	t0047	2811	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	t0048	2815	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCO1_chr3_196501879_196520346	1/0	t0001	1146	251	10	46	153	8	33	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/1	t0002	1146	94	42	22	11	9	9	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0003	1146	31	27	4	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0004	1146	9	0	0	4	0	5	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0005	1146	3	3	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0006	1146	3	3	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0007	1146	2	2	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0008	1146	1	0	1	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0009	1146	1	0	1	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0010	1146	1	0	0	0	0	1	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0011	1146	1	0	0	0	1	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	t0012	1146	1	1	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO2_chr12_27441736_27507185	0/0	t0001	165	151	55	33	38	8	17	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	1/1	t0002	165	122	8	12	79	4	17	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	t0003	165	42	2	1	35	0	4	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	t0004	165	24	14	4	1	1	4	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	t0005	101	12	12	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	t0006	101	9	1	2	3	1	2	copy fasta	SMCO2	chr12	27441736	27507185
SMCO3_chr12_14799650_14819182	1/1	t0001	1427	195	26	34	94	13	26	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0002	1428	72	30	8	21	2	11	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0003	1427	52	7	20	17	1	7	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0004	1428	32	5	17	7	2	1	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0005	1428	10	0	0	10	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0006	1427	9	9	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0007	1427	6	5	1	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0008	1427	3	3	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0009	1427	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0010	1427	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0011	1427	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0012	1428	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0013	1427	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0014	1427	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0015	1427	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0016	1427	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0017	1428	1	0	0	0	0	1	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0018	1427	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	t0019	1427	1	0	0	1	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO4_chr11_93473472_93548391	0/1	t0001	802	144	19	13	89	4	18	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0002	798	89	4	15	60	1	9	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0003	800	60	12	17	27	1	3	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0004	812	36	17	9	1	3	6	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0005	804	23	0	8	6	4	5	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0006	804	9	3	2	3	0	1	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	1/0	t0007	808	7	4	0	1	0	1	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0008	808	6	5	0	1	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0009	814	6	5	0	0	1	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0010	802	5	0	0	5	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	t0011	790	4	2	2	0	0	0	copy fasta	SMCO4	chr11	93473472	93548391