JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMG7_chr1_183467499_183559191	0/0	t0007	2384	13	6	2	5	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0008	2378	4	0	0	3	0	1	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0009	2383	4	2	0	1	0	1	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0010	2383	4	0	0	4	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0011	2385	3	0	0	3	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0012	2380	2	0	0	1	1	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0013	2385	2	0	0	2	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0014	2385	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0015	2383	1	0	0	0	0	1	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0016	2387	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0017	2383	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0018	2384	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0019	2384	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0020	2387	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0021	2383	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	t0022	2386	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG8_chr17_59205035_59220230	1/1	t0001	246	392	90	72	174	16	38	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	t0002	246	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	t0003	246	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG9_chr19_43722983_43759962	1/1	t0001	3929	158	10	36	86	7	17	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0002	3929	38	12	8	12	1	5	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0003	3929	11	11	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0004	3929	6	6	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0005	3929	6	6	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0006	3929	5	0	1	0	1	3	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0007	3930	5	0	1	4	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0008	3929	5	3	0	0	2	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0009	3929	4	0	0	4	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0010	3929	4	4	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0011	3929	4	4	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0012	3929	3	3	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0013	3930	3	0	0	1	0	2	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0014	3929	3	3	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0015	3929	3	3	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0016	3930	2	1	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0017	3930	2	0	0	2	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0018	3929	2	0	0	2	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0019	3929	2	2	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0020	3929	2	2	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0021	3929	2	1	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0022	3929	2	1	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0023	3929	2	0	0	2	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0024	3929	2	0	0	0	0	2	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0025	3951	2	1	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0026	3929	2	0	0	1	1	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0027	3929	2	2	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0028	3929	2	2	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0029	3929	2	2	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0030	3929	2	2	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0031	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962