JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMG9_chr19_43722983_43759962	0/0	t0032	3929	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0033	3929	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0034	3930	1	0	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0035	3929	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0036	3930	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0037	3929	1	0	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0038	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0039	3929	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0040	3929	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0041	3929	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0042	3929	1	0	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0043	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0044	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0045	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0046	3929	1	0	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0047	3931	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0048	3929	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0049	3930	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0050	3929	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0051	3929	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0052	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0053	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0054	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0055	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0056	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0057	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0058	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0059	3929	1	0	1	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0060	3929	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0061	3929	1	0	0	0	0	1	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	t0062	3929	1	1	0	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMIM10L1_chr12_11166194_11181016	0/0	t0001	4617	167	9	19	111	6	22	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0002	4617	60	29	16	6	4	5	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/1	t0003	4616	59	5	7	36	2	8	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0004	4616	31	11	14	0	2	4	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0005	4615	16	16	0	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0006	4617	7	5	2	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0007	4617	6	3	3	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0008	4612	5	0	0	5	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0009	4616	5	0	4	1	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0010	4616	3	0	3	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0011	4616	2	0	0	2	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0012	4616	2	1	1	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0013	4619	2	0	0	0	0	2	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0014	4617	2	0	0	2	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0015	4616	2	2	0	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0016	4617	2	2	0	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0017	4616	1	0	0	1	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0018	4616	1	0	1	0	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L1_chr12_11166194_11181016	0/0	t0019	4616	1	0	0	1	0	0	copy fasta	SMIM10L1	chr12	11166194	11181016