Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BEGAIN_chr14_100532147_100592417	0/0	t0012	950	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0013	950	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0014	950	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0015	951	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0016	950	1	1	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	t0017	950	1	1	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEND2_chrX_18157931_18225886	1/0	t0001	2215	208	45	27	108	5	22	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/1	t0002	2215	46	5	17	9	6	8	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0003	2216	9	8	1	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0004	2215	4	3	1	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0005	2214	4	0	2	2	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0006	2214	4	4	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0007	2215	3	0	0	3	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0008	2215	3	1	2	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0009	2215	3	0	0	3	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0010	2215	2	2	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0011	2216	2	2	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0012	2207	1	0	1	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0013	2215	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0014	2215	1	0	0	0	0	1	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0015	2215	1	1	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0016	2215	1	0	0	0	0	1	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0017	2215	1	1	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	t0018	2215	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND3_chr6_107060182_107120515	0/0	t0001	3958	74	10	14	40	1	9	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/1	t0002	3959	53	4	24	9	2	13	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	1/0	t0003	3960	42	8	2	27	0	4	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0004	3960	35	16	5	7	3	4	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0005	3960	31	2	5	14	6	4	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0006	3957	16	0	3	13	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0007	3957	8	8	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0008	3959	6	4	1	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0009	3959	5	0	0	4	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0010	3960	5	1	1	2	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0011	3960	5	0	1	4	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0012	3959	4	1	3	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0013	3958	4	4	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0014	3958	4	0	0	4	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0015	3961	4	4	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0016	3960	4	0	0	4	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0017	3961	4	1	0	3	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0018	3960	4	0	1	0	0	3	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0019	3961	4	0	0	4	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0020	3961	3	0	0	2	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0021	3960	3	3	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0022	3961	2	2	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0023	3956	2	2	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0024	3960	2	2	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0025	3957	2	0	0	2	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0026	3958	2	0	2	0	0	0	copy fasta	BEND3	chr6	107060182	107120515