JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM10_chrX_134985991_134997473	0/0	t0015	1233	1	1	0	0	0	0	copy fasta	SMIM10	chrX	134985991	134997473
SMIM11_chr21_34370507_34394151	0/1	t0001	664	109	30	30	24	5	19	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0002	663	4	1	2	1	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0003	665	3	0	1	0	1	1	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0004	664	3	2	1	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0005	664	2	0	1	1	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0006	664	2	1	1	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0007	663	1	0	0	1	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0008	664	1	1	0	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0009	664	1	0	0	1	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0010	662	1	0	0	1	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0011	664	1	0	0	1	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	t0012	664	1	1	0	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM12_chr1_34845362_34864749	0/0	t0001	5421	69	0	7	55	1	6	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0002	5422	29	0	2	25	0	2	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0003	5421	19	0	8	10	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0004	5398	17	14	3	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0005	5409	10	1	5	0	3	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0006	5421	6	0	5	0	1	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0007	5410	6	0	5	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0008	5429	5	0	0	5	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0009	5398	5	1	1	0	2	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0010	5399	5	4	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0011	5422	5	0	3	2	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0012	5422	5	2	0	3	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0013	5430	4	0	0	4	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0014	5430	4	0	0	4	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0015	5398	4	4	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0016	5421	4	0	0	4	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0017	5414	4	0	1	0	1	2	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0018	5395	3	1	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0019	5421	3	0	0	3	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0020	5412	3	0	0	0	0	3	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0021	5410	3	0	1	0	1	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0022	5415	3	0	1	0	0	2	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0023	5412	3	0	3	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0024	5422	3	0	0	0	0	3	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0025	5422	3	0	1	0	0	2	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0026	5420	3	3	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0027	5407	3	3	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0028	5398	3	0	2	0	1	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0029	5424	2	0	0	2	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0030	5426	2	0	0	2	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0031	5422	2	0	0	1	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0032	5427	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0033	5421	2	0	0	0	0	2	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0034	5427	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0035	5422	2	0	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0036	5418	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0037	5408	2	1	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749