JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM12_chr1_34845362_34864749	0/0	t0038	5412	2	0	1	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0039	5409	2	0	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0040	5413	2	0	0	0	1	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0041	5422	2	0	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0042	5422	2	0	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0043	5416	2	0	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0044	5399	2	0	2	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0045	5395	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0046	5396	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0047	5398	2	0	0	0	2	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0048	5407	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0049	5405	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0050	5414	2	2	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0051	5430	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0052	5399	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0053	5430	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0054	5431	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0055	5428	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0056	5428	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0057	5429	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0058	5429	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0059	5429	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0060	5429	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0061	5429	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0062	5429	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0063	5427	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0064	5428	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0065	5428	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0066	5421	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0067	5426	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0068	5427	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0069	5427	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0070	5423	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/1	t0071	5422	1	0	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0072	5413	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0073	5412	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0074	5422	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0075	5427	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0076	5414	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0077	5410	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0078	5414	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0079	5407	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0080	5404	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0081	5426	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0082	5424	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0083	5430	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0084	5422	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0085	5423	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0086	5423	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0087	5424	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749