JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM12_chr1_34845362_34864749	0/0	t0088	5419	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0089	5419	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0090	5421	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0091	5421	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0092	5421	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0093	5418	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0094	5422	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0095	5422	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0096	5419	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0097	5423	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0098	5421	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0099	5412	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0100	5412	1	0	0	0	1	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0101	5409	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0102	5412	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0103	5410	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0104	5413	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0105	5410	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0106	5414	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0107	5411	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0108	5414	1	0	0	0	1	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0109	5411	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0110	5415	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0111	5413	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0112	5423	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0113	5422	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0114	5423	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0115	5424	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0116	5416	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0117	5410	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	1/0	t0118	5416	1	0	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0119	5416	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0120	5415	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0121	5421	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0122	5426	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0123	5422	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0124	5422	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0125	5422	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0126	5423	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0127	5402	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0128	5408	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0129	5408	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0130	5409	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0131	5409	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0132	5396	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0133	5399	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0134	5396	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0135	5421	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0136	5395	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0137	5421	1	0	0	1	0	0	copy fasta	SMIM12	chr1	34845362	34864749