JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM12_chr1_34845362_34864749	0/0	t0138	5396	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0139	5424	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0140	5423	1	0	0	0	0	1	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0141	5417	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0142	5417	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0143	5418	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0144	5396	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0145	5396	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0146	5395	1	0	1	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0147	5406	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0148	5407	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0149	5407	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0150	5398	1	0	0	0	1	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0151	5407	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0152	5409	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0153	5398	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM12_chr1_34845362_34864749	0/0	t0154	5403	1	1	0	0	0	0	copy fasta	SMIM12	chr1	34845362	34864749
SMIM13_chr6_11088834_11143733	0/1	t0001	4612	100	1	17	63	3	15	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	1/0	t0002	4612	75	19	17	19	8	11	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0003	4611	71	15	10	41	1	4	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0004	4612	41	10	3	27	0	1	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0005	4611	22	7	5	4	2	4	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0006	4610	21	0	11	1	2	7	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0007	4610	19	17	2	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0008	4611	17	0	3	14	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0009	4611	5	5	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0010	4609	3	3	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0011	4612	2	2	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0012	4611	2	0	0	2	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0013	4611	2	2	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0014	4612	2	2	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0015	4611	2	0	0	2	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0016	4612	1	0	0	0	0	1	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0017	4610	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0018	4612	1	0	0	0	0	1	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0019	4612	1	0	0	1	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0020	4611	1	0	0	1	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0021	4612	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0022	4611	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0023	4612	1	0	0	1	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0024	4612	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0025	4611	1	0	0	0	0	1	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0026	4612	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0027	4611	1	0	0	0	0	1	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0028	4611	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0029	4611	1	0	1	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0030	4611	1	1	0	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM13_chr6_11088834_11143733	0/0	t0031	4612	1	0	1	0	0	0	copy fasta	SMIM13	chr6	11088834	11143733
SMIM14_chr4_39541336_39643865	0/0	t0001	5953	49	6	13	26	1	3	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0002	5948	45	0	7	24	2	12	copy fasta	SMIM14	chr4	39541336	39643865