JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM14_chr4_39541336_39643865	0/0	t0003	5952	44	20	4	20	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0004	5953	40	6	11	11	2	10	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0005	5954	39	0	9	23	2	5	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0006	5952	16	6	1	7	0	2	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0007	5952	16	9	1	5	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	1/0	t0008	5953	11	9	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0009	5948	9	0	3	6	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0010	5953	8	0	1	4	1	2	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0011	5954	6	0	1	5	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0012	5953	6	5	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0013	5953	6	0	0	6	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/1	t0014	5948	3	2	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0015	5952	3	0	3	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0016	5949	2	2	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0017	5952	2	0	1	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0018	5952	2	0	1	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0019	5952	2	1	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0020	5953	2	0	0	2	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0021	5952	2	0	0	0	0	2	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0022	5952	2	2	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0023	5953	2	0	2	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0024	5953	2	2	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0025	5953	1	0	0	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0026	5952	1	0	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0027	5953	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0028	5953	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0029	5952	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0030	5948	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0031	5949	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0032	5954	1	0	0	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0033	5954	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0034	5954	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0035	5953	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0036	5948	1	0	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0037	5948	1	0	0	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0038	5949	1	0	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0039	5949	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0040	5948	1	0	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0041	5949	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0042	5948	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0043	5953	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0044	5953	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0045	5953	1	1	0	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0046	5953	1	0	0	1	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0047	5953	1	0	1	0	0	0	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0048	5953	1	0	0	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM14_chr4_39541336_39643865	0/0	t0049	5948	1	0	0	0	0	1	copy fasta	SMIM14	chr4	39541336	39643865
SMIM15_chr5_61152704_61167468	0/0	t0001	2670	106	11	20	61	5	9	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	1/0	t0002	2664	60	36	11	0	3	9	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/1	t0003	2672	36	10	3	15	2	5	copy fasta	SMIM15	chr5	61152704	61167468