JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM15_chr5_61152704_61167468	0/0	t0004	2672	29	1	1	26	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0005	2674	19	6	4	6	0	3	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0006	2670	17	0	0	17	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0007	2673	14	5	4	4	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0008	2666	12	4	6	0	1	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0009	2676	8	1	2	2	0	3	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0010	2675	5	0	2	1	1	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0011	2678	4	0	1	2	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0012	2671	4	2	1	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0013	2669	4	0	2	0	2	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0014	2658	3	3	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0015	2666	3	0	0	2	1	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0016	2668	3	0	0	1	0	2	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0017	2670	3	2	0	0	1	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0018	2674	3	1	1	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0019	2671	3	0	2	0	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0020	2666	2	0	0	2	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0021	2672	2	0	0	2	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0022	2669	2	0	1	0	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0023	2671	2	2	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0024	2673	2	2	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0025	2668	2	2	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0026	2676	2	2	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0027	2666	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0028	2673	1	0	0	0	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0029	2670	1	0	0	0	0	1	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0030	2673	1	0	1	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0031	2668	1	0	0	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0032	2668	1	0	0	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0033	2671	1	0	0	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0034	2672	1	0	0	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0035	2644	1	0	1	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0036	2662	1	0	1	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0037	2675	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0038	2677	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0039	2660	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0040	2680	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0041	2666	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	t0042	2670	1	0	0	1	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM17_chr19_56638159_56662247	0/0	t0001	2188	107	8	17	69	3	10	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	1/0	t0002	2187	103	33	27	19	6	17	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0003	2188	49	1	7	33	4	4	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0004	2187	31	6	7	14	0	4	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0005	2187	28	1	2	21	1	3	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/1	t0006	2188	21	7	9	0	4	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0007	2187	14	9	0	4	0	1	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0008	2189	9	0	0	9	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0009	2187	6	6	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0010	2188	6	6	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0011	2189	6	0	3	3	0	0	copy fasta	SMIM17	chr19	56638159	56662247