JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM17_chr19_56638159_56662247	0/0	t0012	2187	4	4	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0013	2188	4	0	1	3	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0014	2187	3	2	1	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0015	2188	3	3	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0016	2188	2	2	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0017	2187	2	0	2	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0018	2188	1	0	0	0	0	1	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0019	2188	1	0	1	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0020	2188	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0021	2188	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0022	2187	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0023	2187	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0024	2188	1	0	0	0	0	1	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0025	2188	1	0	1	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0026	2188	1	0	0	1	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0027	2188	1	0	1	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0028	2188	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0029	2188	1	0	0	1	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0030	2188	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0031	2189	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0032	2187	1	0	0	1	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0033	2188	1	0	0	0	0	1	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0034	2188	1	0	1	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0035	2187	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0036	2187	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	t0037	2187	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM18_chr8_30633580_30651064	1/1	t0001	638	177	54	19	67	7	28	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	t0002	638	138	39	29	62	2	6	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	t0003	638	109	2	27	66	5	9	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	t0004	638	3	0	0	0	0	3	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	t0005	638	1	0	0	1	0	0	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	t0006	638	1	0	1	0	0	0	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	t0007	638	1	1	0	0	0	0	copy fasta	SMIM18	chr8	30633580	30651064
SMIM19_chr8_42536585_42560195	0/1	t0001	3382	132	32	28	51	5	15	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	1/0	t0002	3381	104	5	12	74	3	9	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0003	3381	19	17	1	0	0	1	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0004	3379	18	0	6	8	0	4	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0005	3381	18	10	0	7	0	1	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0006	3383	11	2	4	3	1	1	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0007	3381	7	7	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0008	3382	7	0	0	7	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0009	3380	6	1	0	3	1	1	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0010	3381	6	0	2	4	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0011	3382	6	0	3	2	1	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0012	3382	6	0	3	0	1	2	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0013	3381	4	0	0	4	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0014	3381	4	3	1	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0015	3383	4	2	0	2	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0016	3381	4	4	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0017	3381	3	0	3	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195