JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM19_chr8_42536585_42560195	0/0	t0018	3382	3	3	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0019	3383	2	0	2	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0020	3382	2	2	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0021	3382	2	0	0	2	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0022	3382	1	1	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0023	3381	1	0	0	1	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0024	3381	1	1	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0025	3381	1	0	0	1	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0026	3381	1	0	0	0	0	1	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0027	3381	1	0	0	0	0	1	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0028	3381	1	0	1	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0029	3381	1	0	0	1	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0030	3382	1	1	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0031	3382	1	0	1	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0032	3381	1	1	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0033	3381	1	1	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0034	3382	1	1	0	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0035	3381	1	0	0	1	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0036	3381	1	0	1	0	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM19_chr8_42536585_42560195	0/0	t0037	3382	1	0	0	1	0	0	copy fasta	SMIM19	chr8	42536585	42560195
SMIM1_chr1_3767749_3780956	1/1	t0001	270	415	85	84	176	18	50	copy fasta	SMIM1	chr1	3767749	3780956
SMIM1_chr1_3767749_3780956	0/0	t0002	271	4	4	0	0	0	0	copy fasta	SMIM1	chr1	3767749	3780956
SMIM1_chr1_3767749_3780956	0/0	t0003	270	1	1	0	0	0	0	copy fasta	SMIM1	chr1	3767749	3780956
SMIM20_chr4_25909220_25934812	0/1	t0001	716	155	77	26	22	9	20	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	1/0	t0002	716	88	7	16	48	4	12	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0003	716	82	1	22	58	0	1	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0004	716	81	4	9	60	3	5	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0005	716	14	8	0	6	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0006	716	14	0	5	3	0	6	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0007	716	1	1	0	0	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0008	716	1	0	0	1	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0009	716	1	0	0	1	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	t0010	716	1	0	0	1	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM21_chr18_75404476_75432703	0/1	t0001	1531	162	68	22	63	2	6	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0002	1531	93	5	11	68	4	5	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0003	1531	92	2	16	52	7	15	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	1/0	t0004	1529	44	11	17	1	3	11	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0005	1535	11	1	2	3	0	5	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0006	1533	8	0	3	5	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0007	1529	3	3	0	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0008	1533	2	2	0	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0009	1529	2	1	1	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0010	1531	2	0	2	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0011	1531	1	1	0	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0012	1529	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0013	1531	1	0	0	0	0	1	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0014	1529	1	0	0	0	0	1	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0015	1531	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0016	1533	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0017	1531	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703