JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM21_chr18_75404476_75432703	0/0	t0018	1531	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0019	1535	1	0	1	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0020	1531	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0021	1531	1	0	1	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0022	1531	1	0	0	0	0	1	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	t0023	1535	1	0	0	0	0	1	copy fasta	SMIM21	chr18	75404476	75432703
SMIM22_chr16_4790369_4801491	1/0	t0001	362	270	76	46	112	13	22	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/1	t0002	362	129	10	25	64	5	24	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	t0003	362	2	2	0	0	0	0	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	t0004	362	1	0	1	0	0	0	copy fasta	SMIM22	chr16	4790369	4801491
SMIM23_chr5_171780817_171796136	1/1	t0001	104	268	61	49	112	10	34	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	t0002	104	161	27	36	80	6	12	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	t0003	104	1	0	1	0	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM24_chr19_3468986_3485525	1/0	t0001	920	161	35	34	57	7	27	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/1	t0002	934	157	20	19	100	3	14	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0003	920	41	3	8	28	0	2	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0004	920	26	21	3	0	0	2	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0005	920	17	2	10	0	2	3	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0006	920	10	10	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0007	920	2	2	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0008	920	2	2	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0009	934	1	0	1	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0010	920	1	1	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0011	920	1	1	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0012	933	1	0	0	1	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0013	920	1	1	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	t0014	934	1	0	1	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525
SMIM26_chr20_18562432_18574560	1/1	t0001	203	437	93	83	198	16	45	copy fasta	SMIM26	chr20	18562432	18574560
SMIM26_chr20_18562432_18574560	0/0	t0002	203	2	1	1	0	0	0	copy fasta	SMIM26	chr20	18562432	18574560
SMIM26_chr20_18562432_18574560	0/0	t0003	203	1	0	0	0	0	1	copy fasta	SMIM26	chr20	18562432	18574560
SMIM27_chr9_32547327_32558007	1/1	t0001	193	381	91	74	160	16	38	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	t0002	193	3	3	0	0	0	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM27_chr9_32547327_32558007	0/0	t0003	193	2	0	0	2	0	0	copy fasta	SMIM27	chr9	32547327	32558007
SMIM28_chr6_138372905_138388486	1/1	t0001	808	285	52	56	127	14	34	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0002	807	57	17	7	28	1	4	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0003	808	20	19	0	0	1	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0004	809	4	0	1	2	0	1	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0005	808	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0006	808	1	0	0	1	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0007	808	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0008	809	1	0	0	0	0	1	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0009	809	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0010	808	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0011	808	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM28_chr6_138372905_138388486	0/0	t0012	807	1	1	0	0	0	0	copy fasta	SMIM28	chr6	138372905	138388486
SMIM29_chr6_34241395_34254006	0/0	t0001	510	241	47	47	102	12	33	copy fasta	SMIM29	chr6	34241395	34254006
SMIM29_chr6_34241395_34254006	1/1	t0002	510	106	46	25	29	0	4	copy fasta	SMIM29	chr6	34241395	34254006
SMIM29_chr6_34241395_34254006	0/0	t0003	510	4	1	1	0	1	1	copy fasta	SMIM29	chr6	34241395	34254006
SMIM29_chr6_34241395_34254006	0/0	t0004	510	1	0	0	1	0	0	copy fasta	SMIM29	chr6	34241395	34254006
SMIM29_chr6_34241395_34254006	0/0	t0005	510	1	0	0	0	1	0	copy fasta	SMIM29	chr6	34241395	34254006