JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM29_chr6_34241395_34254006	0/0	t0006	510	1	0	1	0	0	0	copy fasta	SMIM29	chr6	34241395	34254006
SMIM2_chr13_44138150_44166257	1/0	t0001	958	206	65	26	95	3	16	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/1	t0002	958	110	9	31	40	10	19	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	t0003	958	50	12	6	20	3	9	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	t0004	958	10	9	1	0	0	0	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	t0005	958	1	1	0	0	0	0	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	t0006	958	1	0	0	0	0	1	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	t0007	958	1	0	0	0	0	1	copy fasta	SMIM2	chr13	44138150	44166257
SMIM2_chr13_44138150_44166257	0/0	t0008	958	1	0	0	1	0	0	copy fasta	SMIM2	chr13	44138150	44166257
SMIM30_chr7_113111718_113123554	1/0	t0001	832	210	39	44	96	7	23	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/1	t0002	833	102	36	23	16	7	19	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0003	833	9	9	0	0	0	0	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0004	832	6	0	5	1	0	0	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0005	833	4	4	0	0	0	0	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0006	832	1	0	0	1	0	0	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0007	832	1	0	0	1	0	0	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0008	833	1	0	0	0	0	1	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0009	833	1	0	0	0	0	1	copy fasta	SMIM30	chr7	113111718	113123554
SMIM30_chr7_113111718_113123554	0/0	t0010	833	1	0	0	1	0	0	copy fasta	SMIM30	chr7	113111718	113123554
SMIM31_chr4_164749131_164808795	0/0	t0001	2908	103	15	19	56	3	10	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	1/1	t0002	2908	64	12	7	32	5	6	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0003	2908	40	10	11	10	5	4	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0004	2908	32	1	7	19	0	5	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0005	2908	25	4	5	15	0	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0006	2908	22	0	4	16	0	2	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0007	2908	13	12	1	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0008	2908	12	10	2	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0009	2908	6	0	1	3	1	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0010	2906	4	1	3	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0011	2908	4	4	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0012	2908	3	3	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0013	2908	3	3	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0014	2906	3	0	2	0	0	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0015	2908	3	0	0	3	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0016	2908	3	0	0	2	0	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0017	2909	2	1	0	0	0	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0018	2908	2	0	0	2	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0019	2909	2	2	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0020	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0021	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0022	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0023	2906	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0024	2909	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0025	2909	1	0	1	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0026	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0027	2908	1	0	0	1	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0028	2909	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0029	2908	1	0	0	0	0	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0030	2908	1	0	0	1	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0031	2908	1	0	0	1	0	0	copy fasta	SMIM31	chr4	164749131	164808795