Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BEND3_chr6_107060182_107120515	0/0	t0027	3959	2	2	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0028	3959	2	0	0	2	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0029	3959	2	0	1	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0030	3959	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0031	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0032	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0033	3961	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0034	3955	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0035	3959	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0036	3959	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0037	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0038	3960	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0039	3957	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0040	3958	1	0	1	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0041	3960	1	0	1	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0042	3958	1	0	0	0	1	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0043	3959	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0044	3959	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0045	3959	1	0	0	0	1	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0046	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0047	3961	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0048	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0049	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0050	3960	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0051	3960	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0052	3960	1	0	1	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0053	3961	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0054	3959	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0055	3958	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0056	3961	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0057	3961	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0058	3961	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0059	3960	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0060	3957	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0061	3958	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0062	3959	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	t0063	3960	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND4_chr4_42105853_42157655	1/1	t0001	7023	76	5	26	22	4	17	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0002	7024	37	10	6	8	1	12	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0003	7024	14	11	1	0	2	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0004	7024	13	8	2	2	1	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0005	7024	12	12	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0006	7024	10	9	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0007	7024	10	10	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0008	7024	9	0	4	3	0	2	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0009	7024	7	7	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0010	7024	5	5	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0011	7024	5	0	0	4	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0012	7024	3	0	3	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0013	7023	2	0	1	0	1	0	copy fasta	BEND4	chr4	42105853	42157655