JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM31_chr4_164749131_164808795	0/0	t0032	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0033	2908	1	0	0	0	0	1	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0034	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0035	2908	1	0	0	1	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0036	2908	1	1	0	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM31_chr4_164749131_164808795	0/0	t0037	2908	1	0	1	0	0	0	copy fasta	SMIM31	chr4	164749131	164808795
SMIM32_chr5_136186468_136198162	1/1	t0001	1384	211	12	38	117	10	32	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0002	1384	93	22	5	57	4	5	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0003	1385	47	17	12	13	2	3	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0004	1384	22	12	4	4	2	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0005	1384	15	14	1	0	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0006	1385	10	8	2	0	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0007	1384	3	3	0	0	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0008	1384	2	0	0	2	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0009	1384	1	1	0	0	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0010	1384	1	0	0	1	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0011	1384	1	1	0	0	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0012	1384	1	0	0	1	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM32_chr5_136186468_136198162	0/0	t0013	1384	1	0	0	1	0	0	copy fasta	SMIM32	chr5	136186468	136198162
SMIM33_chr5_139466004_139478700	1/1	t0001	898	395	83	71	189	16	34	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0002	898	10	9	1	0	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0003	898	3	3	0	0	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0004	898	2	0	2	0	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0005	898	2	0	0	2	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0006	898	1	1	0	0	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0007	898	1	1	0	0	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0008	898	1	0	0	1	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM33_chr5_139466004_139478700	0/0	t0009	898	1	1	0	0	0	0	copy fasta	SMIM33	chr5	139466004	139478700
SMIM35_chr11_117998634_118091963	0/1	t0001	2983	107	2	20	65	2	17	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0002	2983	58	1	5	45	3	4	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	1/0	t0003	2983	43	16	14	0	7	5	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0004	2983	32	8	15	5	2	2	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0005	2983	32	0	0	31	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0006	2983	25	7	7	9	1	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0007	2983	18	10	1	5	0	2	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0008	2983	17	0	4	9	0	4	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0009	2983	10	4	2	0	2	2	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0010	2983	10	4	1	5	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0011	2983	7	6	0	0	1	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0012	2983	6	6	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0013	2983	6	6	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0014	2983	5	3	1	1	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0015	2983	4	4	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0016	2983	3	3	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0017	2983	3	0	1	0	0	2	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0018	2983	3	3	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0019	2983	2	2	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0020	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0021	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0022	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963