JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM35_chr11_117998634_118091963	0/0	t0023	2983	1	0	0	1	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0024	2983	1	0	0	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0025	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0026	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0027	2983	1	0	1	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0028	2983	1	0	0	1	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0029	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0030	2983	1	0	0	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0031	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0032	2983	1	0	0	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0033	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0034	2983	1	1	0	0	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0035	2983	1	0	0	0	0	1	copy fasta	SMIM35	chr11	117998634	118091963
SMIM35_chr11_117998634_118091963	0/0	t0036	2983	1	0	0	1	0	0	copy fasta	SMIM35	chr11	117998634	118091963
SMIM36_chr17_55444856_55516452	1/0	t0001	1093	102	7	24	48	4	18	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0002	1093	61	26	8	21	0	6	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0003	1093	51	3	7	28	2	11	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0004	1093	44	15	5	19	2	3	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/1	t0005	1093	20	0	4	12	0	3	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0006	1093	17	4	7	6	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0007	1093	15	0	9	0	5	1	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0008	1093	8	8	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0009	1093	7	2	2	0	1	2	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0010	1093	4	4	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0011	1093	3	2	1	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0012	1093	2	2	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0013	1093	2	0	0	2	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0014	1093	2	2	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0015	1093	1	0	1	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM36_chr17_55444856_55516452	0/0	t0016	1093	1	1	0	0	0	0	copy fasta	SMIM36	chr17	55444856	55516452
SMIM38_chr11_69150935_69167440	1/0	t0001	5198	140	20	32	81	4	2	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/1	t0002	5198	41	2	11	13	1	13	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0003	5197	26	5	1	20	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0004	5198	25	0	0	25	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0005	5202	22	2	8	9	3	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0006	5197	21	2	8	3	4	4	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0007	5197	14	3	2	8	0	1	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0008	5197	13	13	0	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0009	5197	12	0	2	5	0	5	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0010	5197	11	11	0	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0011	5202	9	0	0	9	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0012	5197	7	0	6	1	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0013	5196	6	0	0	6	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0014	5197	5	4	1	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0015	5197	3	3	0	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0016	5197	3	3	0	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0017	5197	3	3	0	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0018	5194	3	2	1	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0019	5194	3	3	0	0	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0020	5202	3	0	0	2	1	0	copy fasta	SMIM38	chr11	69150935	69167440