JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM38_chr11_69150935_69167440	0/0	t0071	5198	1	0	0	0	0	1	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0072	5197	1	0	0	1	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0073	5197	1	0	0	0	0	1	copy fasta	SMIM38	chr11	69150935	69167440
SMIM38_chr11_69150935_69167440	0/0	t0074	5198	1	0	0	1	0	0	copy fasta	SMIM38	chr11	69150935	69167440
SMIM3_chr5_150773757_150801734	1/1	t0001	1339	373	88	70	166	10	37	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0002	1339	15	7	0	7	0	1	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0003	1339	4	0	3	0	1	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0004	1339	4	0	2	0	0	2	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0005	1339	2	0	0	0	0	2	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0006	1339	2	0	0	0	0	2	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0007	1339	2	0	2	0	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0008	1339	1	0	0	1	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0009	1339	1	1	0	0	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0010	1339	1	0	1	0	0	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM3_chr5_150773757_150801734	0/0	t0011	1339	1	0	0	0	1	0	copy fasta	SMIM3	chr5	150773757	150801734
SMIM40_chr6_33318628_33334279	0/1	t0001	351	370	92	69	155	14	39	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	t0002	351	8	7	1	0	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	t0003	351	2	0	0	2	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	t0004	351	1	0	0	1	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	t0005	351	1	1	0	0	0	0	copy fasta	SMIM40	chr6	33318628	33334279
SMIM40_chr6_33318628_33334279	0/0	t0006	351	1	0	0	0	0	1	copy fasta	SMIM40	chr6	33318628	33334279
SMIM41_chr12_52074704_52113255	1/1	t0001	1149	284	51	57	129	11	34	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0002	1150	46	14	4	24	1	3	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0003	1151	34	24	4	0	2	4	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0004	1149	4	0	0	4	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0005	1151	2	2	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0006	1149	1	1	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0007	1151	1	0	0	0	0	1	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0008	1149	1	1	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0009	1149	1	1	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0010	1149	1	0	1	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0011	1149	1	0	0	1	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0012	1149	1	0	0	1	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0013	1149	1	0	0	1	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0014	1149	1	0	0	0	0	1	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0015	1151	1	1	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0016	1149	1	1	0	0	0	0	copy fasta	SMIM41	chr12	52074704	52113255
SMIM41_chr12_52074704_52113255	0/0	t0017	1149	1	0	0	0	0	1	copy fasta	SMIM41	chr12	52074704	52113255
SMIM42_chr1_158122287_158133301	0/0	t0001	801	135	40	18	53	6	18	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/1	t0002	800	103	9	24	59	4	6	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	1/0	t0003	803	96	22	21	28	5	19	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0004	802	49	20	1	27	0	1	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0005	804	7	1	4	2	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0006	802	6	3	1	2	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0007	801	2	2	0	0	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0008	802	1	1	0	0	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0009	801	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0010	803	1	0	0	0	1	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0011	801	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0012	802	1	0	0	0	0	1	copy fasta	SMIM42	chr1	158122287	158133301