JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM42_chr1_158122287_158133301	0/0	t0013	803	1	0	0	1	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0014	801	1	0	1	0	0	0	copy fasta	SMIM42	chr1	158122287	158133301
SMIM42_chr1_158122287_158133301	0/0	t0015	800	1	0	0	0	0	1	copy fasta	SMIM42	chr1	158122287	158133301
SMIM43_chr4_121753930_121770164	0/0	t0001	2104	157	43	26	75	3	10	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0002	2104	149	2	37	88	6	16	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/1	t0003	2104	40	21	11	0	1	6	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	1/0	t0004	2104	38	1	3	25	3	5	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0005	2104	16	13	0	1	0	2	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0006	2104	8	8	0	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0007	2104	6	0	0	6	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0008	2104	4	0	0	3	0	1	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0009	2104	4	4	0	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0010	2104	2	0	0	2	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0011	2104	2	2	0	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0012	2104	1	0	1	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0013	2104	1	0	0	0	0	1	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0014	2104	1	1	0	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0015	2104	1	0	0	1	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0016	2104	1	0	0	0	0	1	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0017	2104	1	0	0	0	1	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0018	2104	1	0	0	1	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0019	2104	1	0	0	1	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0020	2104	1	0	0	1	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0021	2104	1	0	1	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0022	2104	1	0	1	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM43_chr4_121753930_121770164	0/0	t0023	2104	1	1	0	0	0	0	copy fasta	SMIM43	chr4	121753930	121770164
SMIM44_chr19_3477110_3488441	1/1	t0001	733	278	94	47	91	11	33	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0002	733	115	2	28	75	1	9	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0003	733	2	0	2	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0004	733	1	1	0	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0005	733	1	1	0	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0006	733	1	0	0	0	0	1	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0007	733	1	0	0	0	0	1	copy fasta	SMIM44	chr19	3477110	3488441
SMIM44_chr19_3477110_3488441	0/0	t0008	733	1	0	1	0	0	0	copy fasta	SMIM44	chr19	3477110	3488441
SMIM45_chr22_41947150_41963939	0/0	t0001	1334	171	4	22	117	5	23	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/1	t0002	1338	40	0	11	21	2	5	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0003	1340	40	10	10	9	1	10	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0004	1338	38	21	8	1	5	3	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0005	1342	26	15	10	0	0	1	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0006	1338	10	1	6	3	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0007	1340	9	9	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0008	1340	7	6	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0009	1342	6	5	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	1/0	t0010	1334	6	1	1	0	3	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0011	1334	3	1	1	1	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0012	1332	3	2	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0013	1362	2	1	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0014	1344	2	2	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0015	1334	1	0	0	1	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0016	1340	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939