JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM45_chr22_41947150_41963939	0/0	t0017	1342	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0018	1340	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0019	1372	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0020	1368	1	0	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0021	1366	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0022	1364	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0023	1358	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0024	1354	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0025	1344	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0026	1342	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0027	1338	1	0	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0028	1342	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0029	1334	1	0	0	1	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0030	1338	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0031	1340	1	0	1	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0032	1342	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM45_chr22_41947150_41963939	0/0	t0033	1334	1	1	0	0	0	0	copy fasta	SMIM45	chr22	41947150	41963939
SMIM47_chr19_50780728_50791160	1/1	t0001	141	348	89	78	126	12	41	copy fasta	SMIM47	chr19	50780728	50791160
SMIM47_chr19_50780728_50791160	0/0	t0002	141	3	0	0	0	0	3	copy fasta	SMIM47	chr19	50780728	50791160
SMIM47_chr19_50780728_50791160	0/0	t0003	141	1	1	0	0	0	0	copy fasta	SMIM47	chr19	50780728	50791160
SMIM5_chr17_75628434_75646404	1/1	t0001	1313	385	86	73	163	13	48	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0002	1309	8	0	0	8	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0003	1313	7	7	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0004	1313	2	2	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0005	1313	2	0	1	0	1	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0006	1313	1	1	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0007	1313	1	0	0	1	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0008	1313	1	0	0	1	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0009	1313	1	1	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0010	1313	1	0	0	1	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0011	1313	1	1	0	0	0	0	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0012	1313	1	0	0	0	0	1	copy fasta	SMIM5	chr17	75628434	75646404
SMIM5_chr17_75628434_75646404	0/0	t0013	1313	1	0	0	0	0	1	copy fasta	SMIM5	chr17	75628434	75646404
SMIM6_chr17_75641251_75652974	0/0	t0001	952	362	73	58	172	14	45	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0002	949	22	4	5	12	0	1	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0003	949	10	8	2	0	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0004	957	8	8	0	0	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	1/0	t0005	952	6	3	2	0	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0006	952	2	0	0	1	0	1	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/1	t0007	952	2	0	1	0	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0008	952	1	0	0	0	0	1	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0009	952	1	0	1	0	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0010	952	1	0	0	1	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM6_chr17_75641251_75652974	0/0	t0011	952	1	0	1	0	0	0	copy fasta	SMIM6	chr17	75641251	75652974
SMIM7_chr19_16641148_16665144	1/1	t0001	1133	198	35	46	79	11	25	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0002	1133	63	1	6	50	2	4	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0003	1133	29	28	1	0	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0004	1133	26	5	12	8	0	1	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0005	1133	22	10	4	0	1	7	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0006	1133	9	7	2	0	0	0	copy fasta	SMIM7	chr19	16641148	16665144