JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMIM7_chr19_16641148_16665144	0/0	t0007	1133	6	6	0	0	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0008	1133	2	0	0	2	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0009	1133	1	0	0	1	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0010	1133	1	0	1	0	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0011	1133	1	1	0	0	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0012	1133	1	1	0	0	0	0	copy fasta	SMIM7	chr19	16641148	16665144
SMIM7_chr19_16641148_16665144	0/0	t0013	1133	1	0	0	0	0	1	copy fasta	SMIM7	chr19	16641148	16665144
SMIM8_chr6_87317588_87347329	1/0	t0001	2145	152	14	29	79	10	19	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0002	2143	128	18	15	78	2	15	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/1	t0003	2143	43	4	7	26	1	4	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0004	2143	11	11	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0005	2145	10	1	3	6	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0006	2144	7	7	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0007	2144	7	6	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0008	2143	7	0	4	1	0	2	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0009	2143	6	0	1	0	1	4	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0010	2143	5	5	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0011	2145	4	4	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0012	2144	4	0	2	2	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0013	2145	3	3	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0014	2144	3	2	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0015	2144	3	0	0	0	2	1	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0016	2143	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0017	2143	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0018	2144	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0019	2143	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0020	2143	2	2	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0021	2142	2	0	0	1	0	1	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0022	2144	2	1	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0023	2145	1	0	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0024	2145	1	0	0	1	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0025	2144	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0026	2143	1	0	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0027	2143	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0028	2145	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0029	2144	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0030	2144	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0031	2143	1	0	0	1	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0032	2143	1	0	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0033	2145	1	1	0	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0034	2145	1	0	1	0	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM8_chr6_87317588_87347329	0/0	t0035	2143	1	0	0	1	0	0	copy fasta	SMIM8	chr6	87317588	87347329
SMIM9_chrX_154818348_154839662	0/1	t0001	717	148	5	32	94	5	11	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	1/0	t0002	717	145	65	26	30	6	17	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	t0003	719	3	3	0	0	0	0	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	t0004	717	1	0	0	0	0	1	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	t0005	717	1	1	0	0	0	0	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	t0006	717	1	0	0	1	0	0	copy fasta	SMIM9	chrX	154818348	154839662
SMIM9_chrX_154818348_154839662	0/0	t0007	717	1	0	0	0	0	1	copy fasta	SMIM9	chrX	154818348	154839662
SMKR1_chr7_129497531_129517918	1/1	t0001	772	366	86	74	143	18	43	copy fasta	SMKR1	chr7	129497531	129517918