JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMKR1_chr7_129497531_129517918	0/0	t0002	773	48	2	7	33	0	6	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	t0003	479	5	5	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	t0004	772	1	0	1	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	t0005	807	1	0	0	0	0	1	copy fasta	SMKR1	chr7	129497531	129517918
SMKR1_chr7_129497531_129517918	0/0	t0006	772	1	1	0	0	0	0	copy fasta	SMKR1	chr7	129497531	129517918
SMLR1_chr6_130822406_130842135	1/0	t0001	2189	122	36	30	40	5	10	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0002	2189	79	6	11	56	2	4	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0003	2189	76	22	9	25	1	19	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/1	t0004	2189	58	1	25	15	8	8	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0005	2189	37	0	1	33	0	3	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0006	2189	11	10	1	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0007	2189	8	8	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0008	2189	7	0	0	7	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0009	2188	7	0	0	7	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0010	2189	5	0	0	5	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0011	2189	4	0	0	4	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0012	2189	4	3	1	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0013	2189	3	3	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0014	2189	2	2	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0015	2189	2	0	0	2	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0016	2189	2	0	2	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0017	2189	2	2	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0018	2189	1	0	0	1	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0019	2189	1	0	1	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0020	2189	1	0	0	1	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0021	2189	1	0	1	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0022	2189	1	0	0	0	0	1	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0023	2189	1	0	0	0	0	1	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0024	2189	1	0	0	1	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0025	2189	1	0	0	0	0	1	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0026	2189	1	0	0	0	0	1	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0027	2189	1	0	0	1	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMLR1_chr6_130822406_130842135	0/0	t0028	2189	1	1	0	0	0	0	copy fasta	SMLR1	chr6	130822406	130842135
SMN1_chr5_70920087_70958015	0/0	t0001	598	17	17	0	0	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN1_chr5_70920087_70958015	0/0	t0002	596	14	13	1	0	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN1_chr5_70920087_70958015	0/0	t0003	598	5	0	3	2	0	0	copy fasta	SMN1	chr5	70920087	70958015
SMN2_chr5_70044669_70082595	0/0	t0001	598	84	10	14	37	2	21	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	t0002	598	16	5	2	6	1	2	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	t0003	18	3	0	3	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	t0004	598	2	0	0	0	1	1	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	t0005	596	2	1	1	0	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMN2_chr5_70044669_70082595	0/0	t0006	598	1	0	0	1	0	0	copy fasta	SMN2	chr5	70044669	70082595
SMNDC1_chr10_110285730_110309920	0/1	t0001	3595	126	2	24	79	6	14	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0002	3595	110	51	20	30	2	7	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0003	3595	73	1	3	58	0	11	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	1/0	t0004	3594	19	0	11	0	5	2	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0005	3595	9	0	5	0	0	4	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0006	3594	8	8	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0007	3596	6	0	0	5	0	1	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0008	3602	4	4	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920